![]() ![]() rmarkdown - the package: This is used by R to render the.R Markdown: is a variation on markdown that is specific to R - it allows you to write a document using markdown to produce text and to embed R code and display their outputs.Files written in Markdown have a ‘.md’ extension. Markdown is a “language” that allows you to write a document using plain text, that can be converted to html and other formats.To explain some of the concepts and packages involved: Of note, the R4Epis project has developed template R Markdown scripts for common outbreaks and surveys scenarios encountered at MSF project locations. The page Dashboards with R Markdown explains how to format a R Markdown report as a dashboard.The page Organizing routine reports demonstrates how to routinize your report production with auto-generated time-stamped folders.Other pages in this handbook expand on this topic: Such documents can be produced to update on a routine basis (e.g. daily surveillance reports) and/or run on subsets of data (e.g. reports for each jurisdiction). ![]() You can create an entire formatted document, including narrative text (can be dynamic to change based on your data), tables, figures, bullets/numbers, bibliographies, etc. It can generate static or interactive outputs, in Word, pdf, html, powerpoint, and other formats.Īn R Markdown script intersperces R code and text such that the script actually becomes your output document. R Markdown is a widely-used tool for creating automated, reproducible, and share-worthy outputs, such as reports. 46 Version control and collaboration with Git and Github.33 Demographic pyramids and Likert-scales.19 Univariate and multivariable regression. ![]()
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